Package: jlmerclusterperm
Title: Cluster-Based Permutation Analysis for Densely Sampled Time Data
Version: 1.1.4.9000
Authors@R: 
    person("June", "Choe", , "jchoe001@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-0701-921X"))
Description: An implementation of fast cluster-based permutation
        analysis (CPA) for densely-sampled time data developed in Maris
        & Oostenveld, 2007 <doi:10.1016/j.jneumeth.2007.03.024>.
        Supports (generalized, mixed-effects) regression models for the
        calculation of timewise statistics. Provides both a wholesale
        and a piecemeal interface to the CPA procedure with an emphasis
        on interpretability and diagnostics. Integrates 'Julia'
        libraries 'MixedModels.jl' and 'GLM.jl' for performance
        improvements, with additional functionalities for interfacing
        with 'Julia' from 'R' powered by the 'JuliaConnectoR' package.
License: MIT + file LICENSE
URL: https://github.com/yjunechoe/jlmerclusterperm,
        https://yjunechoe.github.io/jlmerclusterperm/
BugReports: https://github.com/yjunechoe/jlmerclusterperm/issues
Depends: R (>= 3.5)
Imports: backports (>= 1.1.7), cli, generics, JuliaConnectoR,
        JuliaFormulae, lme4, stats, tools, utils
Suggests: broom, broom.mixed, covr, dplyr, eyetrackingR, forcats,
        future, ggplot2, knitr, MASS, patchwork, readr, rmarkdown,
        scales, testthat (>= 3.0.0), tibble
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE, roclets = c ("namespace", "rd",
        "srr::srr_stats_roclet"))
RoxygenNote: 7.3.2
SystemRequirements: Julia (>= 1.8)
Collate: 'jlmerclusterperm-package.R' 'aaa.R' 'utils.R'
        'interop-utils.R' 'interop-utils-unexported.R' 'julia_rng.R'
        'jlmer_spec.R' 'jlmer.R' 'compute_timewise_statistics.R'
        'permute.R' 'permute_timewise_statistics.R'
        'clusters_methods.R' 'extract_clusters.R' 'calculate_pvalue.R'
        'clusterpermute.R' 'threshold_search.R' 'tidy.R' 'zzz.R'
        'srr-stats-standards.R' 'data.R'
Config/pak/sysreqs: cmake make
Repository: https://yjunechoe.r-universe.dev
Date/Publication: 2026-09-27 11:02:07 UTC
RemoteUrl: https://github.com/yjunechoe/jlmerclusterperm
RemoteRef: HEAD
RemoteSha: 8fdcacd34f2b97dff9809290ce11577b3dcced1f
NeedsCompilation: no
Packaged: 2026-10-27 11:36:33 UTC; root
Author: June Choe [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-0701-921X>)
Maintainer: June Choe <jchoe001@gmail.com>