Package: jlmerclusterperm
Title: Cluster-Based Permutation Analysis for Densely Sampled Time Data
Version: 1.1.4
Authors@R: 
    person("June", "Choe", , "jchoe001@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-0701-921X"))
Description: An implementation of fast cluster-based permutation
        analysis (CPA) for densely-sampled time data developed in Maris
        & Oostenveld, 2007 <doi:10.1016/j.jneumeth.2007.03.024>.
        Supports (generalized, mixed-effects) regression models for the
        calculation of timewise statistics. Provides both a wholesale
        and a piecemeal interface to the CPA procedure with an emphasis
        on interpretability and diagnostics. Integrates 'Julia'
        libraries 'MixedModels.jl' and 'GLM.jl' for performance
        improvements, with additional functionalities for interfacing
        with 'Julia' from 'R' powered by the 'JuliaConnectoR' package.
License: MIT + file LICENSE
URL: https://github.com/yjunechoe/jlmerclusterperm,
        https://yjunechoe.github.io/jlmerclusterperm/
BugReports: https://github.com/yjunechoe/jlmerclusterperm/issues
Depends: R (>= 3.5)
Imports: backports (>= 1.1.7), cli, generics, JuliaConnectoR,
        JuliaFormulae, lme4, stats, tools, utils
Suggests: broom, broom.mixed, covr, dplyr, eyetrackingR, forcats,
        future, ggplot2, knitr, MASS, patchwork, readr, rmarkdown,
        scales, testthat (>= 3.0.0), tibble
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE, roclets = c ("namespace", "rd",
        "srr::srr_stats_roclet"))
RoxygenNote: 7.3.2
SystemRequirements: Julia (>= 1.8)
Collate: 'jlmerclusterperm-package.R' 'aaa.R' 'utils.R'
        'interop-utils.R' 'interop-utils-unexported.R' 'julia_rng.R'
        'jlmer_spec.R' 'jlmer.R' 'compute_timewise_statistics.R'
        'permute.R' 'permute_timewise_statistics.R'
        'clusters_methods.R' 'extract_clusters.R' 'calculate_pvalue.R'
        'clusterpermute.R' 'threshold_search.R' 'tidy.R' 'zzz.R'
        'srr-stats-standards.R'
Config/pak/sysreqs: cmake make
Repository: https://yjunechoe.r-universe.dev
Date/Publication: 2025-03-10 17:19:39 UTC
RemoteUrl: https://github.com/yjunechoe/jlmerclusterperm
RemoteRef: HEAD
RemoteSha: a16a95cde59358ce09e1ae0474ca68a9a8a5845d
NeedsCompilation: no
Packaged: 2026-06-15 09:36:22 UTC; root
Author: June Choe [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-0701-921X>)
Maintainer: June Choe <jchoe001@gmail.com>